ncRNAClassifier

Laboratoire IBISC - Informatique, Biologie Intégrative et Systèmes Complexes

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Publications

Contact

fariza.tahi@ibisc.univ-evry.fr

Other software and tools developped by the team

TFold - RNA secondary structure prediction
miRNAFold - Ab initio miRNA prediction in genomes
SSCA - Sequences Selection for the Comparative Approach
RNA-SC - RNA secondary Structure Comparison

Other tools

Pseudoviewer - Structure visualization
RNAViz - Structure visualization
VARNA - Visualization Applet for RNA
ClustalW - Sequence alignment

External and related links

IBISC laboratory
AMISBIO Team
University of Evry Val d'Essonne
Génopole
CNRS
"Pole de competitivite" System@tics

IDDN.FR.001.220007.000.s.A.2010.000.30000

Protected work, the holder of exclusive rights is the University of Evry Val d'Essonne For questions about rights and access usage contact Ms Tahi:
fariza.tahi@ibisc.univ-evry.fr

Installation of ncRNAClassifier:

Click on the interface picture and download the JAR file
Download ClustalW from this website : http://www.clustal.org/clustal2/
Copy the ClustalW binary in the ncRNAClassifier directory
- On Windows, rename the binary to "clustalw.exe"
- On Mac OS and Linux, rename the binary to "clustalw2"

Using ncRNAClassifier interface:

Double click on the JAR file
OR
Put "java -jar ncRNAClassifier.jar on a termimal

Using ncRNAClassifier command line on terminal:

Put "java -jar ncRNAClassifier -i 'genome' 'name' 'sequence'"
- 'genome' is the name of genome where the sequence is (Ex: Human)
- 'name' is the name of the sequence (Ex: toto)
- 'sequence' is the sequence of STADEN format (Ex: ATACTACTAG)
Put "java -jar ncRNAClassifier.jar -h for more options